NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310888_10480414

Scaffold Ga0310888_10480414


Overview

Basic Information
Taxon OID3300031538 Open in IMG/M
Scaffold IDGa0310888_10480414 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007671Metagenome / Metatranscriptome347Y
F089186Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0310888_104804141F089186N/AVIDSFIAHTRADQNLDHANAFLLMCQSVPPLTMREVNDALNVARNMAEHLLLFMDGIDTFYANFEVVPRLPCDLLSE
Ga0310888_104804142F007671N/AVTSSPNRATSPLQLAGTRLGYTEADLSRLLEVSGGGPLSSPEDVRRIIDGYRYLEDWRADYRIQSVRSSLHSSRITCIDAAILSYGLLELLCPEVERRLLAIHRRDPKSGEEVGHCVALYWAASGRIGAISKSSFKGLGHREPIFPDETAVASSLAKAYVDMGFQPLYFGVTTLE

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